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Contents
Contents
MGX User Guide
Contents
Installation
Prerequisites
Java
Supported Operating Systems
Memory and disk requirements
Internet connection
Obtaining MGX
Using the MGX application
Obtaining a MGX project
MGX roles
Basic concepts
Metadata
Connecting to a MGX server
Creating a new habitat
Creating new samples and DNA extracts
Importing sequence data
Quality control
Defining and executing analysis jobs
Selecting an analysis pipeline
Monitoring job progress
Visualization of results
Exporting sequences
Biodiversity indices
Uploading own files
Reference mapping
Importing reference genomes
Displaying reference mappings
Search
Implementing custom analysis pipelines
Getting started
Workflow requirements
Annotating metagenome sequences
Creating hierarchical attributes
Bibliography
List of Figures
List of Tables
About this document ...
Sebastian Jaenicke, 2020-04-28
MGX User Guide